1
F known clades. Although the majority of the outlier viruses found in our study were also URFs, they remained outliers after the removal of recombinant segments. It thus appears that these sequences represent viruses that are genuinely highly divergent and are possibly extant descendants of previously unknown early divergingTable 3 Inter and intraclade recombinantsSample ID BS02 BS09 BS11 BS13 BS2
1
Trees were constructed from these sequences with 100 full maximum likelihood bootstrap replicates (implemented in PHYML [14]), following either complete removal of recombinant sequence fragments or the division of recombinant sequences into their constituent fragments by a blinded fully exploratory screen for recombination using RDP3 [15]. The recombination screen was fully exploratory in that eve
1
F known clades. Although the majority of the outlier viruses found in our study were also URFs, they remained outliers after the removal of recombinant segments. It thus appears that these sequences represent viruses that are genuinely highly divergent and are possibly extant descendants of previously unknown early divergingTable 3 Inter and intraclade recombinantsSample ID BS02 BS09 BS11 BS13 BS2
1
Pacity of latex beads similar to primary AMs deficient in MARCO and SR-AI/II. All three clones showed significantly decreased uptake of fluorescent latex beads compared to the wild type primary AMs (Fig. 6A). Observed differences in phagocytic capacity between these clones and parental primary AMs from MS-/- mice may reflect the heterogeneity seen in populations of primary alveolar macrophages.ZK1
1
Ovided a very important tool to facilitate biological study of macrophages [20-23]. Several murine macrophage cell lines from bone marrow [24,25], spleen [26,27], fetal liver [28,29], and lung [30] have been successfully obtained by in vitro infection of primary cell cultures with a recombinant J2 retrovirus carrying the v-raf and v-myc oncogenes. In addition, investigation of the function of both
1
Ovided a very important tool to facilitate biological study of macrophages [20-23]. Several murine macrophage cell lines from bone marrow [24,25], spleen [26,27], fetal liver [28,29], and lung [30] have been successfully obtained by in vitro infection of primary cell cultures with a recombinant J2 retrovirus carrying the v-raf and v-myc oncogenes. In addition, investigation of the function of both
1
R macrophages which was derived from brochoalveolar lavage (BAL) obtained from MS-/- mice [31]. Immortalization was conducted by infection of the primary AMs from MS/- mice with a retrovirus J2. The immortalized AMs were cloned by limiting dilution method. Three of the clones, designated as ZK-1, ZK-2 and ZK-6 were chosen for further characterization of macrophage phenotype and phagocytic function
1
R macrophages which was derived from brochoalveolar lavage (BAL) obtained from MS-/- mice [31]. Immortalization was conducted by infection of the primary AMs from MS/- mice with a retrovirus J2. The immortalized AMs were cloned by limiting dilution method. Three of the clones, designated as ZK-1, ZK-2 and ZK-6 were chosen for further characterization of macrophage phenotype and phagocytic function